DCAF Ligase Reagents for Targeted Protein Degradation Research

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Driving Next-Generation Degradation with DCAF Ligase Reagents

Trilogie Bioscience’s DCAF ligase reagents enable targeted investigation of CRL4-mediated ubiquitination, substrate recognition, and selective protein degradation pathways. These purified, pre-assembled human protein complexes support biochemical assays, mechanistic studies, and next-generation targeted protein degradation research workflows.

DCAFs (DDB1- and CUL4-associated factors) function as substrate receptors within the CRL4 E3 ubiquitin ligase complex, recruiting specific proteins for ubiquitylation and proteasomal degradation. Through this selective substrate recognition, DCAF-containing ligase complexes regulate key biological processes including DNA repair, cell cycle progression, transcription, and protein homeostasis.

The DCAF Ligase Family and CRL4 Complex Biology

DCAFs serve as substrate receptors for CRL4 E3 ubiquitin ligase complexes, enabling selective recruitment of target proteins for ubiquitylation and degradation through the ubiquitin proteasome system. Their modular architecture supports precise regulation of cellular signaling and protein turnover pathways.

Key Biological Roles of DCAF Ligases

  • DNA repair regulation
  • Cell cycle progression
  • Transcriptional regulation
  • Protein homeostasis
  • Selective ubiquitylation
  • Proteasomal degradation pathways

DCAF Ligases in Targeted Protein Degradation

DCAF ligases have emerged as important tools for targeted protein degradation and molecular glue development because of their ability to mediate highly selective substrate recruitment and induced proximity interactions.

CRL4DCAF E3 Ligase Architecture and Mechanism

The CRL4DCAF complex consists of CUL4A, DDB1, RBX1, DDA1, E2 ubiquitin-conjugating enzymes, and a DCAF substrate receptor. DCAF proteins recruit specific substrates to the ubiquitination machinery, enabling selective protein degradation and pathway regulation.

Reference:

Cheng, J., Bin, X., Tang, Z. Cullin-RING Ligase 4 in Cancer: Structure, Functions, and Mechanisms. Biochimica et Biophysica Acta. 2024 Sept;1879(5):189169, doi: 10.1016/j.bbcan.2024.189169. PMID: 39117093.

DCAF ligase reagents examples

Schematic representation of the SCF (SKP1–Cullin–F-box) E3 ligase complex highlighting the substrate recognition role of F-box proteins within ubiquitin-mediated degradation pathways.

Why Use Trilogie DCAF Ligase Reagents?

Trilogie’s DCAF ligase products are designed to support reproducible biochemical assays and mechanistic studies through the use of purified, pre-assembled, and functionally active human protein complexes.

Benefits of Trilogie DCAF Ligase Products

  • Human DCAF / DDB1 / DDA1 complexes
  • DDA1 included for enhanced complex stability
  • Purified and pre-assembled reagents
  • Functionally active for biochemical assays
  • Supports molecular glue and degrader workflows
  • Suitable for mechanistic and structural studies
  • Ready-to-use reagents for drug discovery applications

DCAF11 and DCAF16 Reagents for Targeted Protein Degradation Research

Trilogie offers functionally active DCAF11 / DDB1 / DDA1 and DCAF16 / DDB1 / DDA1 complexes for investigating substrate recruitment, ternary complex formation, induced proximity biology, and CRL4-mediated degradation pathways.

DCAF11 / DDB1 / DDA1 Complex

DCAF11 / DDB1 / DDA1 structure

The DCAF11 complex supports studies of ubiquitin-mediated degradation, substrate recognition, and degrader-induced protein interactions.

DCAF16 / DDB1 / DDA1 Complex

DCAF16 / DDB1 / DDA1 structure example

The DCAF16 complex enables mechanistic investigation of molecular glue biology, induced proximity systems, and CRL4-dependent degradation pathways.

Functional Validation of DCAF16 / DDB1 / DDA1 Complex Assembly

The hook effect analysis shown above demonstrates functional assembly and biological activity of the DCAF16 / DDB1 / DDA1 complex using the KB02-JQ1 degrader and BRD4 substrate system. Signal intensity increases across degrader concentrations until reaching a maximum near 1 μM before declining at higher concentrations, consistent with ternary complex hook effect behavior commonly observed in induced proximity systems.

Hook effect analysis of DCAF16 / DDB1 and BRD4 using KBO2-JQ1 degrader
Hook effect analysis of DCAF16 / DDB1 and BRD4

Increasing 615 nm signal is observed across increasing concentrations of KB02-JQ1 reaching a maximum at ~1 μM. Higher concentrations result in a signal decline, consistent with a hook effect.
Zhang, X. et al. (2019) Nat Chem Biol. 15(7):737–746

Available DCAF Ligase Products

ProductProduct CodePriceDetails
DCAF16 / DDB1 / DDA1TE3-112From $350.00Show details
DCAF11 / DDB1 / DDA1TE3-099From $350.00Show details

Need additional assay components or customized degradation workflow support?

Applications

Targeted Protein Degradation Research

Study substrate recruitment, CRL4-mediated ubiquitination, and induced degradation pathways using functionally active DCAF ligase complexes.

Molecular Glue Discovery

Evaluate degrader-mediated ternary complex formation and selective protein interactions in molecular glue development workflows.

PROTAC and Induced Proximity Assays

Support biochemical characterization of targeted protein degradation systems and induced proximity biology.

DNA Repair and Cell Cycle Studies

Investigate DCAF-regulated pathways involved in DNA repair, transcriptional regulation, and cell cycle progression.

Drug Discovery and Screening

Enable reproducible biochemical assays for therapeutic discovery programs targeting ubiquitin-mediated degradation pathways.

Frequently Asked Questions

DCAFs (DDB1- and CUL4-associated factors) are substrate receptor proteins within CRL4 E3 ubiquitin ligase complexes that recruit target proteins for ubiquitylation and proteasomal degradation.

CRL4 complexes are Cullin-RING E3 ubiquitin ligase assemblies containing CUL4A, DDB1, RBX1, DDA1, and a DCAF substrate receptor protein.

DDA1 is included to enhance complex stability and support proper assembly of functional CRL4DCAF protein complexes.

Applications include targeted protein degradation research, molecular glue discovery, degrader screening, CRL4 mechanistic assays, and ubiquitin pathway studies.

No. These products are for research use only and are not approved for diagnostic or therapeutic use.